rs6491544 chr13:100098954 T>C
- Sequence
gggcatgggctctgttacaatgca[T/C]gatgaaataccgtgtcataataca
- ASB in cell types
- mesenchymal stem cells HT29 (colon adenocarcinoma)
- ASB for transcription factors
- CEBPB_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 1.37 | -0.82 | 1.22 | -3.82 | Concordant | |||
| PPARG_HUMAN | 1.50 | -3.82 | 2.50 | n/a | No Hit |
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Motif analysis
