rs6495017 chr15:72797284 T>A
- Sequence
cgcctccgggcagccttcccggac[T/A]accccaggacttgggggcgtggct
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- TTP_HUMAN ZN436_HUMAN ZFX_HUMAN ZN600_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TTP_HUMAN | 1.79 | -2.97 | 1.67 | n/a | n/a | |||
| ZN436_HUMAN | 1.94 | n/a | 1.33 | 0.59 | Weak Discordant | |||
| ZFX_HUMAN | -0.53 | 1.08 | 1.00 | n/a | No Hit | |||
| ZN600_HUMAN | -1.56 | 1.35 | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | 1.67 | -0.91 | 2.00 | n/a | n/a |
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Motif analysis
