rs6510666 chr19:2395962 T>C
- Sequence
gcgcagcttgcagtgagccgagat[T/C]gcgccaccgcactccagcctgggc
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- SMAD4_HUMAN TEAD3_HUMAN SKI_HUMAN ATF7_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD4_HUMAN | 2.37 | -2.28 | 1.33 | n/a | No Hit | |||
| TEAD3_HUMAN | 2.41 | -2.32 | 1.33 | n/a | n/a | |||
| SKI_HUMAN | 1.77 | -2.02 | 1.33 | n/a | n/a | |||
| ATF7_HUMAN | 1.55 | -1.83 | 1.33 | n/a | n/a | |||
| FOXA2_HUMAN | 1.33 | -1.60 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood