rs651601 chr19:39436185 T>C
- Sequence
tcgtgtgcggactgaagggaaggc[T/C]gcgggagtgtgcttcgcgtcctct
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) LNCaP C4-2B (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- GABPA_HUMAN JUN_HUMAN BCL3_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 0.93 | 0.67 | 1.60 | n/a | No Hit | |||
| JUN_HUMAN | -0.07 | 1.20 | 1.68 | n/a | No Hit | |||
| BCL3_HUMAN | -1.14 | 1.34 | 1.50 | n/a | n/a | |||
| ZFX_HUMAN | -1.50 | 1.80 | 1.00 | 4.96 | Concordant | |||
| STAT1_HUMAN | 0.99 | -0.30 | 2.21 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood