rs652783 chr1:23187820 G>T
- Sequence
gtttcatgcactttggtccccaga[G/T]gaactgtgagctccatgagggacc
- ASB in cell types
- HepG2 (hepatoblastoma) liver keratinocytes
- ASB for transcription factors
- HNF4A_HUMAN RXRA_HUMAN RARA_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | -0.77 | 1.90 | 1.33 | 2.34 | Concordant | |||
| RXRA_HUMAN | -2.60 | 2.51 | 1.33 | n/a | No Hit | |||
| RARA_HUMAN | -2.28 | 2.32 | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | -0.95 | 2.07 | 1.33 | n/a | No Hit | |||
| SNAI2_HUMAN | 2.05 | -1.81 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis