rs6532146 chr4:89245627 C>A
- Sequence
tggggccacccatctggagtaggc[C/A]ctgttgacagctgctactgtgtac
- ASB in cell types
- VCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.06 | 1.35 | 2.02 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.74 | 1.31 | 1.84 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, hdl cholesterol, ldl cholesterol, major depressive disorder (broad definition), major depressive disorder (broad definition) (females), major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), total cholesterol