rs6542599 chr2:120470601 C>T
- Sequence
gtcttggcaacacagatggaactg[C/T]gtgtctgttgtcagtgggaggaag
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- SMAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD4_HUMAN | 1.96 | -1.81 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, age at death with kuru exposure, hdl cholesterol, microalbuminuria, urinary albumin-to-creatinine ratio