rs654389 chr22:20206338 G>C
- Sequence
gcagggaccacgcccttctctacg[G/C]agcacttcccgtccctcctctgta
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ATF1_HUMAN CTCF_HUMAN NRF1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF1_HUMAN | n/a | 4.29 | 4.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.08 | 0.72 | 1.35 | n/a | No Hit | |||
| NRF1_HUMAN | n/a | 3.72 | 5.00 | n/a | No Hit | |||
| MNT_HUMAN | n/a | 3.50 | 4.00 | n/a | n/a | |||
| HDAC1_HUMAN | n/a | 3.34 | 4.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Pituitary, Prostate, Testis