ADASTRA v1.6.10
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rs6545901
chr2:61695090
T
>
G
Sequence
gctggctgccacgcgggggcgcag[T/G]cagggggtctgcgctgtgtgggta
ASB in cell types
A549 (lung carcinoma)
MCF7 (Invasive ductal breast carcinoma)
Peyer's patch
pancreas
Show more
(+13 others)
ASB for transcription factors
CTCF_HUMAN
SMC3_HUMAN
RAD21_HUMAN
GLIS1_HUMAN
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
1.30
-0.16
4.7·10
-93
1.00
1.40
n/a
No Hit
SMC3_HUMAN
1.45
0.36
1.0·10
-10
1.00
1.10
n/a
n/a
RAD21_HUMAN
1.08
-0.25
1.5·10
-7
1.00
1.23
n/a
n/a
GLIS1_HUMAN
-1.54
1.27
1.00
5.3·10
-4
1.42
n/a
n/a
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Motif analysis
No data available
Genetic associations
GTEx eQTL
Muscle_Skeletal
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)