rs6546227 chr2:66389932 T>C
- Sequence
agtatgcttcacatatttaaggtc[T/C]acttgactcaaggaggggaaactg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN SCRT2_HUMAN ZN335_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.19 | 0.19 | 1.45 | -1.31 | Weak Concordant | |||
| FOXA1_HUMAN | 0.84 | -0.04 | 1.48 | n/a | No Hit | |||
| SCRT2_HUMAN | 2.08 | -2.38 | 1.50 | n/a | n/a | |||
| ZN335_HUMAN | 1.73 | -1.35 | 1.33 | n/a | No Hit |
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Motif analysis
