rs654662 chr1:84969869 C>T
- Sequence
agtaaatattacggaagcagagtt[C/T]tgactctggagagaggggtgagag
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- RAD51_HUMAN ATF7_HUMAN FOXK2_HUMAN MTA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | -2.21 | 2.02 | 1.33 | n/a | n/a | |||
| ATF7_HUMAN | -2.95 | 2.63 | 1.33 | n/a | n/a | |||
| FOXK2_HUMAN | -2.38 | 2.44 | 1.33 | n/a | n/a | |||
| MTA2_HUMAN | -2.52 | 2.34 | 1.33 | n/a | n/a | |||
| BHE40_HUMAN | -1.79 | 1.60 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus