rs654778 chr17:58659112 A>C
- Sequence
actctgaaaataaacacacgcaac[A/C]acacacaagccgtcttttaaacta
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) SK-N-SH (neuroblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- FOXK2_HUMAN JUN_HUMAN BCL3_HUMAN IRF5_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | n/a | 2.97 | 1.33 | n/a | n/a | |||
| JUN_HUMAN | 2.28 | -2.87 | 3.00 | n/a | No Hit | |||
| BCL3_HUMAN | 2.03 | -1.38 | 3.00 | n/a | n/a | |||
| IRF5_HUMAN | -2.10 | 2.16 | 1.33 | n/a | n/a | |||
| PBX3_HUMAN | 2.01 | -1.40 | 2.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood