rs6560911 chr12:132908818 A>G
- Sequence
agcgtcgtttgtcttcccaagccc[A/G]ccagctttcagcgttctccagcct
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) cranial neural crest cells T47D (invasive ductal carcinoma)
- ASB for transcription factors
- ZBT26_HUMAN ZN189_HUMAN ZN600_HUMAN ZN335_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 3.04 | n/a | 2.00 | n/a | n/a | |||
| ZN189_HUMAN | 3.11 | n/a | 2.00 | n/a | n/a | |||
| ZN600_HUMAN | 2.91 | n/a | 2.00 | n/a | n/a | |||
| ZN335_HUMAN | 2.56 | n/a | 2.00 | n/a | No Hit | |||
| ZN394_HUMAN | 2.29 | -1.98 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood