ADASTRA v1.6.10
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rs657118
chr11:118083366
A
>
G
Sequence
accctctcttccgagagagttcac[A/G]caggtcacacgacatcacctccgg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
HDAC1_HUMAN
SMCA4_HUMAN
ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HDAC1_HUMAN
-0.94
1.93
1.00
0.01
2.00
n/a
n/a
SMCA4_HUMAN
-1.51
1.50
1.00
0.03
2.00
n/a
n/a
ARI1B_HUMAN
-3.17
2.26
1.00
0.04
2.00
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (geographic atrophy)
,
diastolic blood pressure (dbp)
GTEx eQTL
Adipose_Visceral_Omentum
,
Adrenal_Gland
,
Artery_Tibial
,
Brain_Cortex
,
Brain_Frontal_Cortex_BA9
,
Colon_Transverse
,
Minor_Salivary_Gland
,
Nerve_Tibial
,
Pituitary
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)