rs657420 chr1:109283514 C>T
- Sequence
aacggttgtgctgcctaacgtggc[C/T]gctaaccgacgctctacgggagga
- ASB in cell types
- K562 (myelogenous leukemia) transverse colon adrenal gland pancreas
- ASB for transcription factors
- CTCF_HUMAN REST_HUMAN E2F1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.66 | -0.28 | 1.37 | n/a | No Hit | |||
| REST_HUMAN | 2.03 | -2.28 | 1.33 | n/a | No Hit | |||
| E2F1_HUMAN | 1.79 | -0.01 | 1.39 | n/a | No Hit | |||
| HDAC1_HUMAN | 0.80 | -0.31 | 1.33 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP college completion, comorbid depressive syndrome and alcohol dependence, diastolic blood pressure (dbp), hdl cholesterol, ldl cholesterol, systolic blood pressure (sbp), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood