rs6577499 chr1:8552045 G>C
- Sequence
gagataagggatagctaaggtcaa[G/C]aattcaaaactaacagcaatgcag
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PPARG_HUMAN | -2.01 | 2.25 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), chronic kidney disease, ldl cholesterol, serum creatinine, total cholesterol, total cholesterol change with statins, triglycerides, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood