rs6580323 chr5:139961194 C>T
- Sequence
gggtttcgggagggttgattgggt[C/T]tgtggtctgaggagaagggggagc
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN PKNX1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -1.12 | 2.15 | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.35 | 1.57 | 1.33 | n/a | n/a | |||
| PKNX1_HUMAN | -2.03 | 1.95 | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | n/a | 1.72 | 1.33 | n/a | n/a | |||
| RUNX3_HUMAN | -1.68 | 1.96 | 1.33 | 0.12 | Weak Concordant |
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Motif analysis
