rs6591335 chr11:68209345 T>C
- Sequence
atgtccagggaacactagagggcg[T/C]atgagagcttctactttcaggaaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) erythroid cells HUES64 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.66 | 1.01 | 1.47 | 2.83 | Concordant | |||
| SMC3_HUMAN | -0.56 | 1.00 | 1.95 | n/a | n/a |
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Motif analysis
