rs6597600 chr9:133144643 C>T
- Sequence
gagcgcgccaagctgaggagcagg[C/T]gggctccgctcacgcccccacacc
- ASB in cell types
- neutrophils liver GM12878 (female B-cells) R3/R4 erythroid cells
- ASB for transcription factors
- RAD21_HUMAN EGR1_HUMAN FOXK2_HUMAN SNAI2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.29 | 0.13 | 1.29 | n/a | n/a | |||
| EGR1_HUMAN | 1.15 | -0.10 | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.67 | -1.90 | 1.33 | n/a | n/a | |||
| SNAI2_HUMAN | 1.37 | -1.14 | 1.50 | 4.53 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Pituitary