ADASTRA v1.6.10
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rs6599571
chr8:144326675
C
>
T
Sequence
cccggccgcagccaagcgtgggcc[C/T]gccgggttcgtagcgcccgaggcg
ASB in cell types
A549 (lung carcinoma)
HCT-116 (colon carcinoma)
hepatocytes
LNCaP (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
RAD21_HUMAN
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Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.20
0.87
1.00
5.5·10
-7
1.35
n/a
No Hit
RAD21_HUMAN
0.14
0.83
0.90
3.8·10
-3
1.30
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL
Artery_Aorta
,
Brain_Cerebellar_Hemisphere
,
Esophagus_Mucosa
,
Lung
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)