ADASTRA v1.6.10
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rs660975
chr1:209827703
A
>
C
Sequence
tttattgcagtatactgtaaagtc[A/C]ctgcattcgactatctccgctact
ASB in cell types
K562 (myelogenous leukemia)
22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.29
0.77
1.00
0.05
1.32
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
fasting blood glucose
,
ldl cholesterol
,
obesity with early age of onset (age >2)
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cerebellum
,
Brain_Cortex
,
Breast_Mammary_Tissue
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Lung
,
Minor_Salivary_Gland
,
Nerve_Tibial
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)