rs660975 chr1:209827703 A>C
- Sequence
tttattgcagtatactgtaaagtc[A/C]ctgcattcgactatctccgctact
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.29 | 0.77 | 1.32 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, ldl cholesterol, obesity with early age of onset (age >2), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Whole_Blood