rs661639 chr3:13093816 C>G
- Sequence
ttggtccacgtgactccgctaggt[C/G]tccccctgtccgttctcagcaccc
- ASB in cell types
- GM12878 (female B-cells) RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- PKNX1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -2.05 | 2.11 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | -2.02 | 2.08 | 2.00 | 4.15 | Concordant |
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Motif analysis
