rs661665 chr2:21042269 C>A
- Sequence
tgttctgcgtttgctcagtacaca[C/A]cctccgggaaggtcgcgtgttggg
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN SMAD4_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -0.26 | 1.47 | 1.78 | n/a | No Hit | |||
| SMAD4_HUMAN | n/a | 2.41 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.77 | 0.17 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic