rs661755 chr1:209827828 C>T
- Sequence
agcccagctgcccacgttctaggg[C/T]tctgagaacactagtgaacgaact
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) D54 (glioblastoma) H54
- ASB for transcription factors
- CTCF_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.39 | 0.81 | 1.43 | n/a | No Hit | |||
| JUN_HUMAN | -0.07 | 0.72 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, cystatin c in serum, fasting blood glucose, rheumatoid arthritis, serum creatinine
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Whole_Blood