rs661849 chr1:209827888 C>T
- Sequence
aaagagctgcggtagggggcagaa[C/T]cgggaaccggatgttctaagcctg
- ASB in cell types
- A549 (lung carcinoma) fetal bone marrow-derived mononuclear cells erythroid progenitors LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN KMT2A_HUMAN GABPA_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.17 | 1.10 | 1.38 | n/a | No Hit | |||
| KMT2A_HUMAN | n/a | 2.85 | 2.00 | n/a | n/a | |||
| GABPA_HUMAN | 0.15 | 1.14 | 1.42 | n/a | No Hit | |||
| STAT1_HUMAN | n/a | 2.55 | 2.50 | n/a | No Hit | |||
| JUN_HUMAN | -0.26 | 0.81 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Lung, Nerve_Tibial, Spleen, Whole_Blood