rs663045 chr1:108200437 G>C
- Sequence
agagagccggaagtgagggagctg[G/C]gagctgggtctcgggaggtgctgt
- ASB in cell types
- K562 (myelogenous leukemia) VCaP (prostate carcinoma)
- ASB for transcription factors
- NRF1_HUMAN GABP1_HUMAN ELF1_HUMAN RFOX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.44 | -1.54 | 1.33 | n/a | No Hit | |||
| GABP1_HUMAN | 1.54 | -1.83 | 1.33 | n/a | n/a | |||
| ELF1_HUMAN | 1.84 | 1.23 | 1.38 | n/a | No Hit | |||
| RFOX2_HUMAN | 1.84 | -2.31 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
EMBL-EBI granulocyte count, granulocyte percentage of myeloid white cells, neutrophil count, sum basophil neutrophil counts, sum neutrophil eosinophil counts, white blood cell count
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Whole_Blood