rs665458 chr1:81894984 G>C
- Sequence
catgggtaataatttgtggaaggt[G/C]aagaggtgccactagtttcagtgt
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | n/a | 2.25 | 1.33 | 3.09 | Concordant |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), diastolic blood pressure (dbp), hdl cholesterol, systolic blood pressure (sbp)