rs6660782 chr1:231038158 A>G
- Sequence
atttcttgaaaggaacttgtcaaa[A/G]cctgcagccatatcttatctttat
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) HEK293T (embryonic kidney)
- ASB for transcription factors
- MEIS2_HUMAN PKNX1_HUMAN ANDR_HUMAN NR2C1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | n/a | 2.69 | 2.50 | n/a | No Hit | |||
| PKNX1_HUMAN | -2.03 | 1.98 | 2.25 | n/a | No Hit | |||
| ANDR_HUMAN | -1.87 | 1.84 | 3.00 | n/a | No Hit | |||
| NR2C1_HUMAN | n/a | 2.09 | 2.50 | n/a | No Hit | |||
| CTBP1_HUMAN | -1.14 | 1.75 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen