rs6660794 chr1:93769001 C>T
- Sequence
tcaagacctgagatctgagtgtcg[C/T]cctttgtccccaagggcctttgag
- ASB in cell types
- cranial neural crest cells HepG2 (hepatoblastoma)
- ASB for transcription factors
- COT1_HUMAN AP2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.45 | 0.29 | 1.75 | -3.07 | Concordant | |||
| AP2A_HUMAN | 1.82 | -1.14 | 2.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid