rs6662684 chr1:10430732 G>C
- Sequence
taactgccgcgggtggtgctggga[G/C]gcggtttccgcggcaacgcggctg
- ASB in cell types
- HEK293 (embryonic kidney) cranial neural crest cells HEK293T (embryonic kidney) foreskin keratinocyte
- ASB for transcription factors
- AP2A_HUMAN ESR1_HUMAN ZFX_HUMAN ZN629_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.69 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.43 | n/a | 2.50 | n/a | No Hit | |||
| ZFX_HUMAN | 1.90 | -0.36 | 2.00 | n/a | No Hit | |||
| ZN629_HUMAN | 2.01 | -1.84 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood