rs66628061 chr20:45779239 C>T
- Sequence
attcatcttagtgtttatttcaag[C/T]ttcttaagtaaagagaaaggtgac
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) ZR-75-1 (invasive ductal carcinoma) breast tumor tissue
- ASB for transcription factors
- FOXA1_HUMAN KDM1A_HUMAN ESR1_HUMAN ATF3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.02 | 0.56 | 1.67 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.98 | -1.62 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.09 | 0.45 | 1.67 | n/a | No Hit | |||
| ATF3_HUMAN | 1.64 | -1.19 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid