rs6664239 chr1:11740464 C>T
- Sequence
atttatcaaaccaaagtgacgtca[C/T]gcagaggagactgtgtgtgtgcta
- ASB in cell types
- GM12878 (female B-cells) coronary artery smooth muscle K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- ATF2_HUMAN ATF7_HUMAN ATF3_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -3.22 | 1.79 | 1.33 | 1.50 | Weak Concordant | |||
| ATF7_HUMAN | -1.86 | 1.60 | 1.17 | n/a | n/a | |||
| ATF3_HUMAN | -0.86 | 0.94 | 1.33 | 0.16 | Weak Concordant | |||
| CREB1_HUMAN | -1.51 | 1.65 | 2.00 | 0.39 | Weak Concordant | |||
| JUND_HUMAN | n/a | 1.79 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Mucosa, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Thyroid