rs666779 chr1:84944861 C>T
- Sequence
tagtgtaagtgtcccaccagatgt[C/T]gcccttgtccttgcccacttcccc
- ASB in cell types
- GM12878 (female B-cells) VCaP (prostate carcinoma) PANC1 (pancreatic ductal adenocarcinoma) esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN TRI22_HUMAN SKIL_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.58 | -0.21 | 1.62 | -3.36 | Concordant | |||
| TRI22_HUMAN | 1.68 | -1.40 | 1.17 | n/a | n/a | |||
| SKIL_HUMAN | 1.83 | n/a | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | 1.56 | -1.58 | 1.33 | n/a | No Hit |
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Motif analysis
