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rs6673829 chr1:3774926 G>A

Sequence
ccagaaggcgccttatcgggcagg[G/A]ttaaggagggggacagttatcagg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
COT1_HUMAN MTG16_HUMAN NCOR1_HUMAN NR2F6_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
COT1_HUMAN 2.22 n/a 8.5·10-81.00 1.33 n/a No Hit
MTG16_HUMAN 0.40 n/a 9.2·10-61.00 1.50 n/a n/a
NCOR1_HUMAN 0.59 -0.28 6.1·10-51.00 1.33 n/a n/a
NR2F6_HUMAN 2.34 -3.21 1.7·10-31.00 1.50 n/a n/a
TAL1_HUMAN 0.78 -0.95 2.0·10-31.00 1.47 n/a No Hit
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Motif analysis

VEZF1_HUMAN Weak Discordant
VEZF1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Lung Muscle_Skeletal Nerve_Tibial Ovary Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Stomach Thyroid Whole_Blood

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