rs6674289 chr1:221335579 A>G
- Sequence
tccttcctgaaagggtatggggac[A/G]tagagaaagatagcatcagtggat
- ASB in cell types
- HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- GATA3_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | 1.52 | -0.94 | 1.90 | n/a | No Hit | |||
| CEBPB_HUMAN | 1.84 | -0.48 | 1.42 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg, Testis