rs6684980 chr1:201153656 C>T
- Sequence
agagtgagccagtgctctgtgccc[C/T]acccttcctcactcctcacccgca
- ASB in cell types
- HEK293 (embryonic kidney) HeLa S3 (cervical adenocarcinoma) MCF7 (Invasive ductal breast carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | 0.73 | -0.10 | 2.04 | |||
| HeLa S3 (cervical adenocarcinoma) | 1.37 | n/a | 1.00 | |||
| MCF7 (Invasive ductal breast carcinoma) | -0.53 | 0.61 | 2.12 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood