rs668622 chr12:120760496 G>A
- Sequence
tctgttcgcctgcagacaggtggc[G/A]tgttttacaggttctactcaacag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte
- ASB for transcription factors
- GRHL2_HUMAN CTCF_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | 1.45 | -0.88 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 2.23 | -3.60 | 2.50 | n/a | No Hit | |||
| ELF1_HUMAN | 2.07 | -1.76 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, body mass index (bmi), coronary artery disease (cad), height, hypertension (early onset hypertension), ldl cholesterol, obesity (body mass index (bmi)), obesity with early age of onset (age >2), total cholesterol, total cholesterol change with statins, urinary albumin-to-creatinine ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid