rs6687891 chr1:248807276 T>C
- Sequence
caacacgcagtgcgcgcagggaaa[T/C]gcagagcccaggctctgcgcactt
- ASB in cell types
- K562 (myelogenous leukemia) T47D (invasive ductal carcinoma) foreskin keratinocyte H1 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.24 | 0.16 | 1.72 | n/a | No Hit | |||
| KDM5B_HUMAN | 2.39 | -3.65 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood