rs6688233 chr1:9275686 C>T
- Sequence
ccaccacccccacaacagctgact[C/T]atagctcgggtaagaggccaccac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HCT-116 (colon carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- EGR1_HUMAN ARI1B_HUMAN RING2_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 1.59 | n/a | 1.39 | n/a | No Hit | |||
| ARI1B_HUMAN | 3.37 | n/a | 1.33 | n/a | n/a | |||
| RING2_HUMAN | 3.36 | n/a | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | 2.26 | n/a | 1.33 | n/a | n/a | |||
| COT1_HUMAN | 1.13 | n/a | 1.33 | n/a | No Hit |
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