ADASTRA v1.6.10
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rs6690515
chr1:1511945
G
>
A
Sequence
cggatgcggcgcggggctgacgct[G/A]ccttgggttcgcctacgtccctcg
ASB in cell types
GM12878 (female B-cells)
fetal bone marrow-derived mononuclear cells
K562 (myelogenous leukemia)
ASB for transcription factors
FOXK2_HUMAN
KMT2A_HUMAN
HTF4_HUMAN
E4F1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN
2.62
0.44
1.1·10
-4
1.00
1.33
n/a
n/a
KMT2A_HUMAN
2.41
-0.18
4.9·10
-4
1.00
1.42
n/a
n/a
HTF4_HUMAN
2.29
n/a
7.0·10
-4
1.00
1.33
n/a
No Hit
E4F1_HUMAN
2.00
n/a
8.7·10
-3
1.00
1.33
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Tibial
,
Brain_Cortex
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)