rs66929873 chr1:235161230 T>A
- Sequence
gctcatcccttccaaggccattct[T/A]actccaaagactcccagactgcag
- ASB in cell types
- periferal blood macrophages CD14+ monocytes breast tumor tissue HCT-116 (colon carcinoma)
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN ESR1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.53 | 0.53 | 1.92 | n/a | No Hit | |||
| STAT1_HUMAN | 1.20 | -0.11 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.71 | n/a | 2.50 | 2.51 | Discordant | |||
| FOXK2_HUMAN | 1.65 | -1.28 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.55 | 1.20 | 1.87 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood