rs6697550 chr1:1679100 A>G
- Sequence
ccccctggctggggacgctgtcac[A/G]gcacccgctacacaggctctgcca
- ASB in cell types
- liver esophagus squamous epithelium stomach HepG2 (hepatoblastoma)
- ASB for transcription factors
- RXRA_HUMAN RAD21_HUMAN CREB1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RXRA_HUMAN | 1.68 | -1.35 | 1.33 | n/a | No Hit | |||
| RAD21_HUMAN | 1.98 | 0.17 | 1.33 | n/a | n/a | |||
| CREB1_HUMAN | 0.94 | 0.00 | 1.62 | n/a | No Hit | |||
| CTCF_HUMAN | 1.70 | 1.06 | 1.58 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Colon_Transverse, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Whole_Blood