rs6697805 chr1:23825506 C>A
- Sequence
gcggccccgcccccgcccctccgc[C/A]gtgacttccgaagctggctccacc
- ASB in cell types
- HEK293 (embryonic kidney) fetal bone marrow-derived mononuclear cells K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- KMT2A_HUMAN USF1_HUMAN TFAP4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 2.58 | 0.96 | 1.42 | n/a | n/a | |||
| USF1_HUMAN | -0.07 | 1.04 | 1.37 | n/a | No Hit | |||
| TFAP4_HUMAN | 0.65 | 1.46 | 1.44 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood