rs670066 chr11:72573490 T>A
- Sequence
ccaccccaccccctcccatatcct[T/A]ctctgacctctggggaggtgagga
- ASB in cell types
- A549 (lung carcinoma) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN THB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.34 | 0.71 | 1.45 | n/a | No Hit | |||
| RAD21_HUMAN | -0.20 | 0.86 | 1.82 | n/a | n/a | |||
| SMC3_HUMAN | -0.63 | 0.90 | 1.88 | n/a | n/a | |||
| THB_HUMAN | 1.90 | n/a | 1.50 | -1.16 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis