rs6705792 chr2:158745674 T>C
- Sequence
tttaaatcgactccaggaggttca[T/C]atttagggcttgccttcagctggg
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.74 | 0.53 | 1.49 | n/a | No Hit | |||
| RAD21_HUMAN | 0.91 | -0.20 | 1.87 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), fasting serum tbf-beta1 (pg/ml) in children
GTEx eQTL Adrenal_Gland, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid