rs6709623 chr2:1817648 C>A
- Sequence
agagaaccctgggagcaggcccag[C/A]gcggccctggggggtggtggcggc
- ASB in cell types
- OVCAR8 (high grade ovarian serous adenocarcinoma) MCF7 (Invasive ductal breast carcinoma) MCF10AT1 (breast premetastatic epithelial cells) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ZN574_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.55 | 0.83 | 1.44 | n/a | No Hit | |||
| RAD21_HUMAN | 0.29 | 0.78 | 1.25 | n/a | n/a | |||
| ZN574_HUMAN | -1.61 | 1.82 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Muscularis