rs6713423 chr2:127701384 A>G
- Sequence
tggggacaccacaaaagtccgcag[A/G]gcaggcaccgcggcacttccgcga
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) COLO-320 (colon adenocarcinoma)
- ASB for transcription factors
- GABPA_HUMAN BC11B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.50 | 0.19 | 1.76 | n/a | No Hit | |||
| BC11B_HUMAN | 1.25 | -1.00 | 2.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Testis