rs67448022 chr3:98914438 C>T
- Sequence
gccaggctgcagatggtgtctaaa[C/T]cccggtaacaggtcatacgtgatg
- ASB in cell types
- A549 (lung carcinoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- JUN_HUMAN HTF4_HUMAN NR1H3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.36 | -0.11 | 2.12 | n/a | No Hit | |||
| HTF4_HUMAN | 2.05 | -1.88 | 2.00 | n/a | No Hit | |||
| NR1H3_HUMAN | 1.80 | -1.09 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid