rs6752638 chr2:191020691 G>A
- Sequence
aaggcggaggcgcgggtggctgcc[G/A]tttcaccttagagggagggaggga
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- JUN_HUMAN CTCF_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.16 | -0.63 | 2.01 | n/a | No Hit | |||
| CTCF_HUMAN | 0.38 | 0.56 | 1.34 | n/a | No Hit | |||
| BCL3_HUMAN | 0.89 | -0.15 | 1.90 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Testis