rs6760318 chr2:197280199 G>A
- Sequence
tcggaaaatcaccttaagcccccc[G/A]gggccatgtgcagtctacagacag
- ASB in cell types
- GM12878 (female B-cells) cranial neural crest cells
- ASB for transcription factors
- IKZF2_HUMAN COT1_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -0.65 | 1.80 | 1.42 | n/a | n/a | |||
| COT1_HUMAN | 2.18 | 0.42 | 1.67 | n/a | No Hit | |||
| ELF1_HUMAN | -1.79 | 2.02 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood